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  5. Solyc08g081310.4.1

Solyc08g081310.4.1


Description : associated component SAP30 of histone deacetylase machineries


Gene families : OG0001164 (Archaeplastida) Phylogenetic Tree(s): OG0001164_tree ,
OG_05_0000888 (LandPlants) Phylogenetic Tree(s): OG_05_0000888_tree ,
OG_06_0017819 (SeedPlants) Phylogenetic Tree(s): OG_06_0017819_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g081310.4.1
Cluster HCCA: Cluster_475

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01019028001 No alias Chromatin organisation.histone modifications.histone... 0.05 Archaeplastida
LOC_Os02g57740.1 No alias associated component SAP30 of histone deacetylase machineries 0.06 Archaeplastida
MA_600107g0010 No alias associated component SAP30 of histone deacetylase machineries 0.02 Archaeplastida
Solyc04g079930.3.1 No alias associated component SAP30 of histone deacetylase machineries 0.03 Archaeplastida
Zm00001e027006_P001 No alias associated component SAP30 of histone deacetylase machineries 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 23 76
No external refs found!