Solyc08g082630.3.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0031856 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g082630.3.1
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00200760	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AMTR_s00025p00198750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.03	Archaeplastida
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.04	Archaeplastida
AT5G60450	ARF4	auxin response factor 4	0.03	Archaeplastida
GSVIVT01011008001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
Gb_33804	No alias	transcription factor (ARF)	0.04	Archaeplastida
Gb_39786	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g36054.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os04g43910.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os10g33940.1	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_10432528g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_137387g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Smo438333	No alias	Auxin response factor 11 OS=Oryza sativa subsp. indica	0.04	Archaeplastida
Solyc01g103050.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc03g031970.4.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e012670_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e013061_P001	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e014833_P002	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e030325_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041866_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0030001	metal ion transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	256	335
IPR033389	AUX/IAA_dom	555	601
IPR033389	AUX/IAA_dom	610	650
IPR003340	B3_DNA-bd	130	230

External Links

No external refs found!

Solyc08g082630.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation