AMTR_s00029p00195890 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.266

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL35a component

Gene families : OG0001985 (Archaeplastida) Phylogenetic Tree(s): OG0001985_tree ,
OG_05_0001931 (LandPlants) Phylogenetic Tree(s): OG_05_0001931_tree ,
OG_06_0002428 (SeedPlants) Phylogenetic Tree(s): OG_06_0002428_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00029p00195890
Cluster	HCCA: Cluster_210

Target	Alias	Description	ECC score	Gene Family Method
AT1G07070	No alias	Ribosomal protein L35Ae family protein	0.03	Archaeplastida
AT1G41880	No alias	Ribosomal protein L35Ae family protein	0.09	Archaeplastida
AT1G74270	No alias	Ribosomal protein L35Ae family protein	0.05	Archaeplastida
AT3G55750	No alias	Ribosomal protein L35Ae family protein	0.02	Archaeplastida
Cpa\|evm.model.tig00020723.23	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
Cre10.g459250	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
GSVIVT01016386001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	Archaeplastida
GSVIVT01034025001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
Gb_35488	No alias	component RPL35a of LSU proteome component	0.05	Archaeplastida
LOC_Os02g54470.1	No alias	component RPL35a of LSU proteome component	0.03	Archaeplastida
LOC_Os05g48220.1	No alias	component RPL35a of LSU proteome component	0.03	Archaeplastida
LOC_Os05g48310.1	No alias	component RPL35a of LSU proteome component	0.03	Archaeplastida
Mp1g11470.1	No alias	component RPL35a of LSU proteome component	0.05	Archaeplastida
Pp3c11_9630V3.1	No alias	Ribosomal protein L35Ae family protein	0.05	Archaeplastida
Pp3c13_8360V3.1	No alias	Ribosomal protein L35Ae family protein	0.06	Archaeplastida
Pp3c1_4030V3.1	No alias	Ribosomal protein L35Ae family protein	0.06	Archaeplastida
Pp3c3_3480V3.1	No alias	Ribosomal protein L35Ae family protein	0.06	Archaeplastida
Pp3c4_29970V3.1	No alias	Ribosomal protein L35Ae family protein	0.05	Archaeplastida
Pp3c7_17970V3.1	No alias	Ribosomal protein L35Ae family protein	0.08	Archaeplastida
Smo184773	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
Solyc03g096360.4.1	No alias	component RPL35a of LSU proteome component	0.04	Archaeplastida
Solyc05g052800.3.1	No alias	component RPL35a of LSU proteome component	0.04	Archaeplastida
Solyc05g052810.4.1	No alias	component RPL35a of LSU proteome component	0.05	Archaeplastida
Zm00001e009729_P001	No alias	component RPL35a of LSU proteome component	0.05	Archaeplastida
Zm00001e023741_P003	No alias	component RPL35a of LSU proteome component	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004107	chorismate synthase activity	IEP	Neighborhood
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Neighborhood
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Neighborhood
MF	GO:0004478	methionine adenosyltransferase activity	IEP	Neighborhood
CC	GO:0005681	spliceosomal complex	IEP	Neighborhood
CC	GO:0005746	mitochondrial respiratory chain	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006541	glutamine metabolic process	IEP	Neighborhood
BP	GO:0006542	glutamine biosynthetic process	IEP	Neighborhood
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Neighborhood
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0015002	heme-copper terminal oxidase activity	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016211	ammonia ligase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Neighborhood
MF	GO:0016676	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Neighborhood
CC	GO:0070469	respiratory chain	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001780	Ribosomal_L35A	11	105

External Links

No external refs found!

AMTR_s00029p00195890 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation