1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g083120.3.1

Solyc08g083120.3.1


Description : component RPL40 of LSU proteome component


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g083120.3.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.07 Archaeplastida
AMTR_s00095p00146440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
AT1G23410 No alias Ribosomal protein S27a / Ubiquitin family protein 0.06 Archaeplastida
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.36 Archaeplastida
AT2G47110 UBQ6 ubiquitin 6 0.39 Archaeplastida
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.37 Archaeplastida
AT3G62250 UBQ5 ubiquitin 5 0.39 Archaeplastida
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
Cre06.g273600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.4 Archaeplastida
GSVIVT01012906001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.2 Archaeplastida
GSVIVT01022543001 No alias Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum 0.07 Archaeplastida
GSVIVT01028198001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01033876001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.37 Archaeplastida
Gb_01257 No alias component RPL40 of LSU proteome component 0.12 Archaeplastida
Gb_15027 No alias component RPS27a of SSU proteome 0.17 Archaeplastida
Gb_40288 No alias component RPS27a of SSU proteome 0.15 Archaeplastida
Gb_41257 No alias component RPL40 of LSU proteome component 0.16 Archaeplastida
LOC_Os01g22490.1 No alias component RPS27a of SSU proteome 0.12 Archaeplastida
LOC_Os03g13170.1 No alias component RPL40 of LSU proteome component 0.17 Archaeplastida
LOC_Os05g06770.1 No alias component RPS27a of SSU proteome 0.06 Archaeplastida
LOC_Os06g44080.1 No alias ubiquitin-fold protein (RUB) 0.03 Archaeplastida
LOC_Os09g39500.1 No alias component RPL40 of LSU proteome component 0.23 Archaeplastida
MA_10435699g0020 No alias component RPS27a of SSU proteome 0.06 Archaeplastida
MA_13101g0020 No alias component RPL40 of LSU proteome component 0.23 Archaeplastida
MA_529552g0010 No alias component RPS27a of SSU proteome 0.27 Archaeplastida
MA_9129425g0010 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Mp6g16040.1 No alias Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare... 0.02 Archaeplastida
Mp7g12760.1 No alias component RPS27a of SSU proteome 0.1 Archaeplastida
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.32 Archaeplastida
Pp3c10_25270V3.1 No alias ubiquitin extension protein 1 0.38 Archaeplastida
Pp3c12_5640V3.1 No alias ubiquitin 6 0.3 Archaeplastida
Pp3c12_5760V3.1 No alias ubiquitin 6 0.34 Archaeplastida
Pp3c16_3920V3.1 No alias related to ubiquitin 1 0.02 Archaeplastida
Pp3c20_23170V3.1 No alias ubiquitin extension protein 1 0.38 Archaeplastida
Pp3c24_430V3.1 No alias ubiquitin extension protein 1 0.25 Archaeplastida
Pp3c3_25480V3.1 No alias ubiquitin extension protein 1 0.32 Archaeplastida
Pp3c4_11930V3.1 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.2 Archaeplastida
Pp3c4_19000V3.1 No alias ubiquitin 6 0.39 Archaeplastida
Pp3c8_14230V3.1 No alias ubiquitin 6 0.23 Archaeplastida
Smo111605 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Zm00001e000962_P001 No alias component RPL40 of LSU proteome component 0.21 Archaeplastida
Zm00001e000965_P001 No alias component RPL40 of LSU proteome component 0.02 Archaeplastida
Zm00001e003606_P001 No alias component RPS27a of SSU proteome 0.02 Archaeplastida
Zm00001e009474_P001 No alias component RPL40 of LSU proteome component 0.29 Archaeplastida
Zm00001e026237_P001 No alias component RPS27a of SSU proteome 0.37 Archaeplastida
Zm00001e028916_P001 No alias component RPS27a of SSU proteome 0.2 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR001975 Ribosomal_L40e 78 127
No external refs found!