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  5. Solyc08g083130.4.1

Solyc08g083130.4.1


Description : transcription factor (HD-ZIP I/II)


Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g083130.4.1
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00141510 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT2G36610 ATHB22, HB22 homeobox protein 22 0.03 Archaeplastida
AT3G01470 ATHB1, ATHB-1,... homeobox 1 0.03 Archaeplastida
AT4G40060 ATHB16, HB16, ATHB-16 homeobox protein 16 0.05 Archaeplastida
GSVIVT01019655001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01020078001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01027407001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01038619001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Gb_02323 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
Gb_20878 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
LOC_Os02g43330.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os04g45810.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
MA_12053g0010 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
MA_19453g0050 No alias Homeobox-leucine zipper protein HAT5 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c25_13450V3.1 No alias homeobox 1 0.05 Archaeplastida
Pp3c3_37710V3.1 No alias homeobox 3 0.02 Archaeplastida
Solyc04g074700.4.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
Zm00001e000659_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e007381_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e010004_P002 No alias transcription factor (HD-ZIP I/II) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003106 Leu_zip_homeo 78 119
IPR001356 Homeobox_dom 23 76
No external refs found!