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  5. Solyc09g005970.1.1

Solyc09g005970.1.1


Description : subfamily ABCG transporter


Gene families : OG0002321 (Archaeplastida) Phylogenetic Tree(s): OG0002321_tree ,
OG_05_0001596 (LandPlants) Phylogenetic Tree(s): OG_05_0001596_tree ,
OG_06_0001496 (SeedPlants) Phylogenetic Tree(s): OG_06_0001496_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g005970.1.1
Cluster HCCA: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00181450 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.02 Archaeplastida
AT2G37360 No alias ABC-2 type transporter family protein 0.05 Archaeplastida
AT2G39350 No alias ABC-2 type transporter family protein 0.03 Archaeplastida
AT3G55100 No alias ABC-2 type transporter family protein 0.04 Archaeplastida
GSVIVT01025582001 No alias Solute transport.primary active transport.ABC... 0.05 Archaeplastida
Gb_20468 No alias subfamily ABCG transporter 0.03 Archaeplastida
LOC_Os03g17350.1 No alias subfamily ABCG transporter 0.03 Archaeplastida
LOC_Os05g02890.1 No alias subfamily ABCG transporter 0.03 Archaeplastida
Solyc05g054890.4.1 No alias subfamily ABCG transporter 0.03 Archaeplastida
Zm00001e019365_P001 No alias subfamily ABCG transporter 0.04 Archaeplastida
Zm00001e028790_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0006308 DNA catabolic process IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 116 268
IPR013525 ABC_2_trans 436 642
No external refs found!