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  5. Solyc09g005990.4.1

Solyc09g005990.4.1


Description : Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana (sp|q9zut4|pp192_arath : 255.0)


Gene families : OG0018719 (Archaeplastida) Phylogenetic Tree(s): OG0018719_tree ,
OG_05_0004751 (LandPlants) Phylogenetic Tree(s): OG_05_0004751_tree ,
OG_06_0003052 (SeedPlants) Phylogenetic Tree(s): OG_06_0003052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g005990.4.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
Smo103939 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 126 152
IPR002885 Pentatricopeptide_repeat 227 251
IPR002885 Pentatricopeptide_repeat 154 183
IPR002885 Pentatricopeptide_repeat 252 299
No external refs found!