1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g007230.3.1

Solyc09g007230.3.1


Description : C3H zinc finger transcription factor


Gene families : OG0006263 (Archaeplastida) Phylogenetic Tree(s): OG0006263_tree ,
OG_05_0007634 (LandPlants) Phylogenetic Tree(s): OG_05_0007634_tree ,
OG_06_0009343 (SeedPlants) Phylogenetic Tree(s): OG_06_0009343_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g007230.3.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT2G20280 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.07 Archaeplastida
Cpa|evm.model.tig00000704.66 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 Archaeplastida
GSVIVT01016357001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 Archaeplastida
Gb_36023 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Mp3g25110.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Pp3c25_2690V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 Archaeplastida
Smo80672 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0019905 syntaxin binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
InterPro domains Description Start Stop
IPR032378 ZC3H15/TMA46_C 217 295
No external refs found!