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  5. Solyc09g007320.4.1

Solyc09g007320.4.1


Description : no hits & (original description: none)


Gene families : OG0001060 (Archaeplastida) Phylogenetic Tree(s): OG0001060_tree ,
OG_05_0004955 (LandPlants) Phylogenetic Tree(s): OG_05_0004955_tree ,
OG_06_0006068 (SeedPlants) Phylogenetic Tree(s): OG_06_0006068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g007320.4.1
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.05 Archaeplastida
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01025536001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.04 Archaeplastida
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.04 Archaeplastida
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.03 Archaeplastida
Zm00001e020088_P001 No alias HCF152 plastidial RNA transcript stability factor 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!