Solyc09g007430.1.1

Description : ssDNA-binding protein (OSB). TAC9 cofactor of plastid-encoded RNA polymerase

Gene families : OG0001359 (Archaeplastida) Phylogenetic Tree(s): OG0001359_tree ,
OG_05_0001061 (LandPlants) Phylogenetic Tree(s): OG_05_0001061_tree ,
OG_06_0010157 (SeedPlants) Phylogenetic Tree(s): OG_06_0010157_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g007430.1.1
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00240430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle machineries.RNA polymerase...	0.03	Archaeplastida
Cre12.g483700	No alias	Cell cycle.organelle machineries.DNA...	0.02	Archaeplastida
Gb_13980	No alias	ssDNA-binding protein (OSB)	0.03	Archaeplastida
MA_10435477g0010	No alias	No annotation	0.03	Archaeplastida
MA_10436156g0010	No alias	ssDNA-binding protein (OSB)	0.05	Archaeplastida
Zm00001e028330_P001	No alias	ssDNA-binding protein (OSB). TAC9 cofactor of...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003848	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	IEP	Neighborhood
MF	GO:0004797	thymidine kinase activity	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Neighborhood
MF	GO:0016778	diphosphotransferase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Neighborhood
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Neighborhood
MF	GO:0019206	nucleoside kinase activity	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000424	Primosome_PriB/ssb	89	184

External Links

No external refs found!

Solyc09g007430.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation