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  5. Solyc09g007440.3.1

Solyc09g007440.3.1


Description : rRNA biogenesis RNA helicase (ROK1)


Gene families : OG0005882 (Archaeplastida) Phylogenetic Tree(s): OG0005882_tree ,
OG_05_0006934 (LandPlants) Phylogenetic Tree(s): OG_05_0006934_tree ,
OG_06_0006389 (SeedPlants) Phylogenetic Tree(s): OG_06_0006389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g007440.3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001071.15 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.03 Archaeplastida
GSVIVT01025641001 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.04 Archaeplastida
Gb_03067 No alias rRNA biogenesis RNA helicase (ROK1) 0.04 Archaeplastida
LOC_Os07g45360.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.06 Archaeplastida
MA_135845g0010 No alias No annotation 0.02 Archaeplastida
MA_17443g0020 No alias DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa... 0.05 Archaeplastida
Mp7g07690.1 No alias rRNA biogenesis RNA helicase (ROK1) 0.04 Archaeplastida
Pp3c10_21520V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Archaeplastida
Smo410231 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 382 487
IPR011545 DEAD/DEAH_box_helicase_dom 178 340
No external refs found!