Solyc09g008040.3.1

Description : basal transcription factor (Sigma)

Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0001853 (LandPlants) Phylogenetic Tree(s): OG_05_0001853_tree ,
OG_06_0008006 (SeedPlants) Phylogenetic Tree(s): OG_06_0008006_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g008040.3.1
Cluster	HCCA: Cluster_211

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00072720	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.08	Archaeplastida
AMTR_s00011p00258380	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.05	Archaeplastida
AMTR_s00011p00266100	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.09	Archaeplastida
AMTR_s00025p00248060	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.05	Archaeplastida
AT1G08540	ATSIG1, SIGB,...	RNApolymerase sigma subunit 2	0.11	Archaeplastida
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.11	Archaeplastida
AT3G53920	SIGC, SIG3	RNApolymerase sigma-subunit C	0.04	Archaeplastida
AT5G13730	SIGD, SIG4	sigma factor 4	0.05	Archaeplastida
GSVIVT01019326001	No alias	RNA biosynthesis.organelle...	0.07	Archaeplastida
GSVIVT01025717001	No alias	RNA biosynthesis.organelle...	0.07	Archaeplastida
GSVIVT01032193001	No alias	RNA biosynthesis.organelle...	0.06	Archaeplastida
GSVIVT01035330001	No alias	RNA biosynthesis.organelle...	0.07	Archaeplastida
Gb_03878	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
Gb_05479	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Gb_05480	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_37602	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
LOC_Os03g16430.1	No alias	basal transcription factor (Sigma)	0.08	Archaeplastida
LOC_Os05g51150.1	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
LOC_Os08g06630.1	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
LOC_Os08g14450.1	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
LOC_Os11g26160.1	No alias	basal transcription factor (Sigma)	0.05	Archaeplastida
MA_10429585g0010	No alias	basal transcription factor (Sigma)	0.06	Archaeplastida
MA_137876g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp4g13380.1	No alias	basal transcription factor (Sigma)	0.05	Archaeplastida
Mp7g15030.1	No alias	basal transcription factor (Sigma)	0.04	Archaeplastida
Pp3c14_22330V3.1	No alias	RNApolymerase sigma subunit 2	0.03	Archaeplastida
Pp3c14_4440V3.1	No alias	sigma factor A	0.04	Archaeplastida
Pp3c1_36580V3.1	No alias	RNApolymerase sigma subunit 2	0.06	Archaeplastida
Smo117159	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
Zm00001e001198_P005	No alias	basal transcription factor (Sigma)	0.03	Archaeplastida
Zm00001e011616_P008	No alias	basal transcription factor (Sigma)	0.02	Archaeplastida
Zm00001e021420_P001	No alias	basal transcription factor (Sigma)	0.09	Archaeplastida
Zm00001e032586_P001	No alias	basal transcription factor (Sigma)	0.07	Archaeplastida
Zm00001e040174_P003	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009119	ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0042278	purine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0045454	cell redox homeostasis	IEP	Neighborhood
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Neighborhood
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007624	RNA_pol_sigma70_r3	408	481
IPR007627	RNA_pol_sigma70_r2	327	396
IPR007630	RNA_pol_sigma70_r4	495	548

External Links

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Solyc09g008040.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation