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  4. Sequence
  5. Solyc09g009230.2.1

Solyc09g009230.2.1


Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 297.0)


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0000062 (SeedPlants) Phylogenetic Tree(s): OG_06_0000062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g009230.2.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00068760 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00013p00069940 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00016p00254630 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00016p00254860 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00023p00151010 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00023p00168910 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
AMTR_s00023p00170960 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00278p00010750 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AT1G65985 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT1G67150 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G44710 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.05 Archaeplastida
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT3G50130 No alias Plant protein of unknown function (DUF247) 0.07 Archaeplastida
AT3G50140 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
AT5G11290 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT5G22550 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
GSVIVT01001131001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_20052 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_27805 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g21650.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os04g42650.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os06g37280.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g30520.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os11g33950.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os11g34090.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10426384g0010 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10434321g0020 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_109716g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 Archaeplastida
MA_120599g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_26069g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 Archaeplastida
MA_6919317g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_749769g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc01g057260.4.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc04g016020.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc04g019313.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc12g099300.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e024232_P001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Neighborhood
MF GO:0004312 fatty acid synthase activity IEP Neighborhood
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Neighborhood
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
CC GO:0033176 proton-transporting V-type ATPase complex IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 48 428
No external refs found!