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  5. Solyc09g009250.3.1

Solyc09g009250.3.1


Description : transcription factor (Trihelix)


Gene families : OG0000662 (Archaeplastida) Phylogenetic Tree(s): OG0000662_tree ,
OG_05_0000467 (LandPlants) Phylogenetic Tree(s): OG_05_0000467_tree ,
OG_06_0008611 (SeedPlants) Phylogenetic Tree(s): OG_06_0008611_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g009250.3.1
Cluster HCCA: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00200990 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.02 Archaeplastida
AMTR_s00041p00147950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.03 Archaeplastida
AT1G76880 No alias Duplicated homeodomain-like superfamily protein 0.03 Archaeplastida
AT3G10000 EDA31 Homeodomain-like superfamily protein 0.03 Archaeplastida
AT5G03680 PTL Duplicated homeodomain-like superfamily protein 0.1 Archaeplastida
GSVIVT01033792001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.04 Archaeplastida
GSVIVT01034705001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.08 Archaeplastida
GSVIVT01035465001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.03 Archaeplastida
Gb_02053 No alias transcription factor (Trihelix) 0.03 Archaeplastida
LOC_Os02g01380.1 No alias transcription factor (Trihelix) 0.04 Archaeplastida
LOC_Os04g45750.1 No alias transcription factor (Trihelix) 0.05 Archaeplastida
LOC_Os10g37240.4 No alias Trihelix transcription factor GT-2 OS=Arabidopsis... 0.03 Archaeplastida
MA_79619g0010 No alias transcription factor (Trihelix) 0.03 Archaeplastida
Pp3c18_11190V3.1 No alias Duplicated homeodomain-like superfamily protein 0.02 Archaeplastida
Zm00001e000092_P003 No alias transcription factor (Trihelix) 0.05 Archaeplastida
Zm00001e013403_P003 No alias transcription factor (Trihelix) 0.03 Archaeplastida
Zm00001e041338_P003 No alias transcription factor (Trihelix) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!