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  4. Sequence
  5. Solyc09g009350.2.1

Solyc09g009350.2.1


Description : no hits & (original description: none)


Gene families : OG0000529 (Archaeplastida) Phylogenetic Tree(s): OG0000529_tree ,
OG_05_0000912 (LandPlants) Phylogenetic Tree(s): OG_05_0000912_tree ,
OG_06_0002634 (SeedPlants) Phylogenetic Tree(s): OG_06_0002634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g009350.2.1
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00035310 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AMTR_s00089p00172750 evm_27.TU.AmTr_v1... No description available 0.08 Archaeplastida
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.12 Archaeplastida
Cpa|evm.model.tig00000042.91 No alias No description available 0.04 Archaeplastida
Cpa|evm.model.tig00000459.51 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00000615.50 No alias No description available 0.02 Archaeplastida
Cpa|evm.model.tig00000615.84 No alias No description available 0.05 Archaeplastida
Cpa|evm.model.tig00020554.153 No alias No description available 0.02 Archaeplastida
GSVIVT01013268001 No alias No description available 0.08 Archaeplastida
GSVIVT01013270001 No alias No description available 0.07 Archaeplastida
GSVIVT01017643001 No alias No description available 0.09 Archaeplastida
GSVIVT01019371001 No alias No description available 0.06 Archaeplastida
Gb_15429 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_23775 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_35998 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os02g27110.1 No alias no hits & (original description: none) 0.09 Archaeplastida
LOC_Os02g27130.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10426328g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10428265g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_10432463g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10436895g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_119498g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_267190g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_295252g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_36612g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_570170g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_74056g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_901094g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Mp3g08780.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp7g07580.2 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c9_20320V3.1 No alias calcium-dependent lipid-binding family protein 0.11 Archaeplastida
Zm00001e029204_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR031642 VPS13_mid_rpt 578 655
IPR026854 VPS13_N 8 117
IPR031646 VPS13_N2 141 385
No external refs found!