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  4. Sequence
  5. Solyc09g009370.4.1

Solyc09g009370.4.1


Description : no hits & (original description: none)


Gene families : OG0000529 (Archaeplastida) Phylogenetic Tree(s): OG0000529_tree ,
OG_05_0000912 (LandPlants) Phylogenetic Tree(s): OG_05_0000912_tree ,
OG_06_0002634 (SeedPlants) Phylogenetic Tree(s): OG_06_0002634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g009370.4.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00035310 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00089p00172750 evm_27.TU.AmTr_v1... No description available 0.07 Archaeplastida
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.25 Archaeplastida
Cpa|evm.model.tig00000042.91 No alias No description available 0.04 Archaeplastida
Cpa|evm.model.tig00000459.51 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00000615.50 No alias No description available 0.02 Archaeplastida
Cpa|evm.model.tig00001343.3 No alias No description available 0.02 Archaeplastida
Cpa|evm.model.tig00020554.153 No alias No description available 0.02 Archaeplastida
Cpa|evm.model.tig00020710.86 No alias No description available 0.02 Archaeplastida
Cre12.g483500 No alias No description available 0.02 Archaeplastida
Cre17.g728250 No alias No description available 0.02 Archaeplastida
GSVIVT01013268001 No alias No description available 0.1 Archaeplastida
GSVIVT01013270001 No alias No description available 0.09 Archaeplastida
GSVIVT01017643001 No alias No description available 0.09 Archaeplastida
GSVIVT01019371001 No alias No description available 0.08 Archaeplastida
Gb_15429 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_23775 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_35998 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os02g27110.1 No alias no hits & (original description: none) 0.08 Archaeplastida
LOC_Os02g27130.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10343795g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10426328g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10428265g0010 No alias no hits & (original description: none) 0.14 Archaeplastida
MA_10432463g0010 No alias no hits & (original description: none) 0.17 Archaeplastida
MA_10436895g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_119498g0010 No alias no hits & (original description: none) 0.14 Archaeplastida
MA_267190g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_295252g0010 No alias no hits & (original description: none) 0.11 Archaeplastida
MA_342412g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_36612g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_74056g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_901094g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Mp3g08780.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g07570.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp7g07580.2 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c9_20320V3.1 No alias calcium-dependent lipid-binding family protein 0.15 Archaeplastida
Zm00001e029204_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR009291 Vps62 783 921
IPR009291 Vps62 572 691
IPR009543 SHR-BD 2004 2176
IPR009543 SHR-BD 1894 2102
No external refs found!