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  5. Solyc09g009400.4.1

Solyc09g009400.4.1


Description : APO protein 3, mitochondrial OS=Arabidopsis thaliana (sp|q9fh50|apo3_arath : 236.0)


Gene families : OG0000992 (Archaeplastida) Phylogenetic Tree(s): OG0000992_tree ,
OG_05_0001157 (LandPlants) Phylogenetic Tree(s): OG_05_0001157_tree ,
OG_06_0004876 (SeedPlants) Phylogenetic Tree(s): OG_06_0004876_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g009400.4.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018392001 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01023615001 No alias APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_29513 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_36551 No alias APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e023481_P001 No alias APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004797 thymidine kinase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016972 thiol oxidase activity IEP Neighborhood
MF GO:0019136 deoxynucleoside kinase activity IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019206 nucleoside kinase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR023342 APO_dom 5 95
IPR023342 APO_dom 139 250
No external refs found!