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  5. Solyc09g010230.2.1

Solyc09g010230.2.1


Description : transcription factor (RAV/NGATHA)


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000986 (SeedPlants) Phylogenetic Tree(s): OG_06_0000986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g010230.2.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
LOC_Os05g47650.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_246350g0010 No alias transcription factor (RAV/NGATHA) 0.06 Archaeplastida
MA_865117g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_953813g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c1_16700V3.1 No alias related to ABI3/VP1 1 0.03 Archaeplastida
Pp3c2_23660V3.1 No alias AP2/B3 transcription factor family protein 0.03 Archaeplastida
Zm00001e000156_P001 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Zm00001e024165_P001 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
Zm00001e026443_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 60 175
No external refs found!