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  5. Solyc09g010830.4.1

Solyc09g010830.4.1


Description : type-I-residues E3 ubiquitin ligase (PRT6)


Gene families : OG0002611 (Archaeplastida) Phylogenetic Tree(s): OG0002611_tree ,
OG_05_0004097 (LandPlants) Phylogenetic Tree(s): OG_05_0004097_tree ,
OG_06_0006106 (SeedPlants) Phylogenetic Tree(s): OG_06_0006106_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g010830.4.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT5G02310 PRT6 proteolysis 6 0.03 Archaeplastida
Cpa|evm.model.tig00001107.13 No alias Protein degradation.N-end rule pathway of targeted... 0.01 Archaeplastida
GSVIVT01034167001 No alias E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01034169001 No alias Protein degradation.N-end rule pathway of targeted... 0.07 Archaeplastida
Gb_11947 No alias type-I-residues E3 ubiquitin ligase (PRT6) 0.02 Archaeplastida
LOC_Os01g05500.2 No alias type-I-residues E3 ubiquitin ligase (PRT6) 0.07 Archaeplastida
MA_10429079g0010 No alias E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10429118g0010 No alias type-I-residues E3 ubiquitin ligase (PRT6) 0.08 Archaeplastida
MA_387g0010 No alias type-I-residues E3 ubiquitin ligase (PRT6) 0.07 Archaeplastida
Mp7g16320.1 No alias type-I-residues E3 ubiquitin ligase (PRT6) 0.03 Archaeplastida
Pp3c10_20380V3.1 No alias proteolysis 6 0.03 Archaeplastida
Pp3c2_29090V3.1 No alias proteolysis 6 0.02 Archaeplastida
Smo438209 No alias Protein degradation.N-end rule pathway of targeted... 0.02 Archaeplastida
Zm00001e016914_P004 No alias type-I-residues E3 ubiquitin ligase (PRT6) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:0030906 retromer, cargo-selective complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR003126 Znf_UBR 122 188
No external refs found!