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  5. Solyc09g011850.4.1

Solyc09g011850.4.1


Description : PAP6/FLN1 cofactor of plastid-encoded RNA polymerase


Gene families : OG0000505 (Archaeplastida) Phylogenetic Tree(s): OG0000505_tree ,
OG_05_0006095 (LandPlants) Phylogenetic Tree(s): OG_05_0006095_tree ,
OG_06_0009885 (SeedPlants) Phylogenetic Tree(s): OG_06_0009885_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g011850.4.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00123310 evm_27.TU.AmTr_v1... Carbohydrate metabolism.sucrose... 0.03 Archaeplastida
AMTR_s00029p00193780 evm_27.TU.AmTr_v1... Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana 0.06 Archaeplastida
AT3G54090 FLN1 fructokinase-like 1 0.21 Archaeplastida
Gb_05959 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
Gb_07834 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.13 Archaeplastida
Gb_13440 No alias Fructokinase-like 1, chloroplastic OS=Arabidopsis... 0.07 Archaeplastida
LOC_Os01g63220.2 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
MA_10430836g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp7g17740.1 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida
Zm00001e019266_P002 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.15 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006450 regulation of translational fidelity IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011611 PfkB_dom 137 450
No external refs found!