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  5. Solyc09g014620.3.1

Solyc09g014620.3.1


Description : High mobility group B protein 1 OS=Arabidopsis thaliana (sp|o49595|hmgb1_arath : 82.8)


Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0016751 (SeedPlants) Phylogenetic Tree(s): OG_06_0016751_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g014620.3.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Gb_07912 No alias High mobility group B protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c16_10320V3.1 No alias high mobility group B1 0.07 Archaeplastida
Pp3c25_7380V3.1 No alias high mobility group B1 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 53 122
No external refs found!