Description : Photosystem II CP43 reaction center protein OS=Coffea arabica (sp|a0a331|psbc_cofar : 112.0)

Gene families : OG0001539 (Archaeplastida) Phylogenetic Tree(s): OG0001539_tree ,
OG_05_0001136 (LandPlants) Phylogenetic Tree(s): OG_05_0001136_tree ,
OG_06_0000942 (SeedPlants) Phylogenetic Tree(s): OG_06_0000942_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: Solyc09g016930.1.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Gb_09041 No alias component PsbD/D2 of PS-II reaction center complex 0.06 Archaeplastida
Gb_19166 No alias Photosystem II CP43 reaction center protein... 0.07 Archaeplastida
Solyc01g056470.1.1 No alias Photosystem II CP43 reaction center protein OS=Amborella... 0.05 Archaeplastida
Zm00001e042042_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.03 Archaeplastida
Zm00001e042172_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 40 67
No external refs found!