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  5. Solyc09g018200.1.1

Solyc09g018200.1.1


Description : transcription factor (OFP)


Gene families : OG0000130 (Archaeplastida) Phylogenetic Tree(s): OG0000130_tree ,
OG_05_0000050 (LandPlants) Phylogenetic Tree(s): OG_05_0000050_tree ,
OG_06_0000120 (SeedPlants) Phylogenetic Tree(s): OG_06_0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g018200.1.1
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AT2G18500 ATOFP7, OFP7 ovate family protein 7 0.03 Archaeplastida
AT2G30400 OFP2, ATOFP2 ovate family protein 2 0.04 Archaeplastida
AT3G52525 ATOFP6, OFP6 ovate family protein 6 0.04 Archaeplastida
AT4G18830 ATOFP5, OFP5 ovate family protein 5 0.03 Archaeplastida
AT5G58360 ATOFP3, OFP3 ovate family protein 3 0.02 Archaeplastida
GSVIVT01017105001 No alias RNA biosynthesis.transcriptional activation.OFP... 0.03 Archaeplastida
Gb_22142 No alias transcription factor (OFP) 0.04 Archaeplastida
LOC_Os04g33870.1 No alias transcription factor (OFP) 0.03 Archaeplastida
LOC_Os04g48830.1 No alias transcription factor (OFP) 0.04 Archaeplastida
LOC_Os04g58820.1 No alias transcription factor (OFP) 0.03 Archaeplastida
LOC_Os07g48150.1 No alias transcription factor (OFP) 0.04 Archaeplastida
LOC_Os10g38880.1 No alias transcription factor (OFP) 0.03 Archaeplastida
Pp3c1_110V3.1 No alias ovate family protein 8 0.03 Archaeplastida
Smo69627 No alias RNA biosynthesis.transcriptional activation.OFP... 0.03 Archaeplastida
Solyc03g034100.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e007176_P001 No alias transcription factor (OFP) 0.03 Archaeplastida
Zm00001e019432_P001 No alias transcription factor (OFP) 0.05 Archaeplastida
Zm00001e025928_P001 No alias transcription factor (OFP) 0.03 Archaeplastida
Zm00001e031752_P001 No alias transcription factor (OFP) 0.03 Archaeplastida
Zm00001e035852_P001 No alias transcription factor (OFP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006458 Ovate_C 192 248
IPR025830 DNA_bnd_dom_ovate 1 42
No external refs found!