Solyc09g025260.4.1

Description : Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana (sp|q94k75|rhon1_arath : 142.0)

Gene families : OG0004476 (Archaeplastida) Phylogenetic Tree(s): OG0004476_tree ,
OG_05_0003078 (LandPlants) Phylogenetic Tree(s): OG_05_0003078_tree ,
OG_06_0008243 (SeedPlants) Phylogenetic Tree(s): OG_06_0008243_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g025260.4.1
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00067p00046000	evm_27.TU.AmTr_v1...	Rho-N domain-containing protein 1, chloroplastic...	0.05	Archaeplastida
AMTR_s00170p00016030	evm_27.TU.AmTr_v1...	No description available	0.02	Archaeplastida
AT1G06190	No alias	Rho termination factor	0.13	Archaeplastida
GSVIVT01028346001	No alias	Rho-N domain-containing protein 1, chloroplastic...	0.04	Archaeplastida
Gb_35766	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_41693	No alias	no hits & (original description: none)	0.09	Archaeplastida
LOC_Os03g08480.1	No alias	SAP-like protein BP-73 OS=Oryza sativa subsp. japonica...	0.05	Archaeplastida
Zm00001e016176_P001	No alias	no hits & (original description: none)	0.11	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006353	DNA-templated transcription, termination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004784	superoxide dismutase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
BP	GO:0006801	superoxide metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Neighborhood
MF	GO:0016972	thiol oxidase activity	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011112	Rho_N	302	333

External Links

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Solyc09g025260.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation