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  5. Solyc09g042760.2.1

Solyc09g042760.2.1


Description : meiotic crossover accessory protein (SPO22/ZIP4)


Gene families : OG0005876 (Archaeplastida) Phylogenetic Tree(s): OG0005876_tree ,
OG_05_0006278 (LandPlants) Phylogenetic Tree(s): OG_05_0006278_tree ,
OG_06_0007652 (SeedPlants) Phylogenetic Tree(s): OG_06_0007652_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g042760.2.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01001528001 No alias Cell cycle.mitosis and meiosis.meiotic... 0.13 Archaeplastida
Pp3c19_1150V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0051321 meiotic cell cycle IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR013940 Spo22/ZIP4/TEX11 183 456
No external refs found!