Solyc09g056450.4.1

Description : U-box domain-containing protein 9 OS=Arabidopsis thaliana (sp|q9srt0|pub9_arath : 209.0)

Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0004745 (LandPlants) Phylogenetic Tree(s): OG_05_0004745_tree ,
OG_06_0003008 (SeedPlants) Phylogenetic Tree(s): OG_06_0003008_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g056450.4.1
Cluster	HCCA: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	evm_27.TU.AmTr_v1...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00025p00052670	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00072p00171260	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
AMTR_s00153p00035720	evm_27.TU.AmTr_v1...	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	Archaeplastida
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.09	Archaeplastida
AT1G71020	No alias	ARM repeat superfamily protein	0.03	Archaeplastida
GSVIVT01007275001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.07	Archaeplastida
GSVIVT01016225001	No alias	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01021265001	No alias	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.15	Archaeplastida
GSVIVT01023893001	No alias	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.06	Archaeplastida
Gb_08792	No alias	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	Archaeplastida
Gb_10627	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.08	Archaeplastida
Gb_10871	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Gb_12875	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Gb_13754	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Gb_24088	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Gb_24091	No alias	U-box domain-containing protein 14 OS=Arabidopsis...	0.04	Archaeplastida
Gb_29129	No alias	U-box domain-containing protein 1 OS=Medicago truncatula...	0.05	Archaeplastida
Gb_29276	No alias	E3 ubiquitin ligase (PUB)	0.06	Archaeplastida
LOC_Os01g60860.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.05	Archaeplastida
LOC_Os02g28720.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os02g49950.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os03g16824.1	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
LOC_Os05g39930.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.05	Archaeplastida
LOC_Os08g37570.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.04	Archaeplastida
MA_69133g0010	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
MA_9478009g0010	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Pp3c23_15760V3.1	No alias	plant U-box 13	0.02	Archaeplastida
Pp3c23_8770V3.1	No alias	plant U-box 14	0.03	Archaeplastida
Pp3c9_17047V3.1	No alias	plant U-box 13	0.02	Archaeplastida
Smo231208	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Smo415326	No alias	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	Archaeplastida
Smo84320	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Zm00001e002954_P001	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Zm00001e003398_P001	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e014566_P002	No alias	E3 ubiquitin ligase (PUB)	0.08	Archaeplastida
Zm00001e019429_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e023475_P001	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Zm00001e028839_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e031915_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Neighborhood
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	68	137

External Links

No external refs found!

Solyc09g056450.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation