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  5. AMTR_s00029p00237540

AMTR_s00029p00237540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.397

Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.light chain


Gene families : OG0002368 (Archaeplastida) Phylogenetic Tree(s): OG0002368_tree ,
OG_05_0002034 (LandPlants) Phylogenetic Tree(s): OG_05_0002034_tree ,
OG_06_0002134 (SeedPlants) Phylogenetic Tree(s): OG_06_0002134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00237540
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AT2G20760 No alias Clathrin light chain protein 0.04 Archaeplastida
Gb_23120 No alias light chain of clathrin triskelion 0.03 Archaeplastida
LOC_Os06g51510.1 No alias light chain of clathrin triskelion 0.06 Archaeplastida
Zm00001e013360_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR000996 Clathrin_L-chain 95 273
No external refs found!