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  5. Solyc09g059980.3.1

Solyc09g059980.3.1


Description : pectin methylesterase


Gene families : OG0012660 (Archaeplastida) Phylogenetic Tree(s): OG0012660_tree ,
OG_05_0012473 (LandPlants) Phylogenetic Tree(s): OG_05_0012473_tree ,
OG_06_0012545 (SeedPlants) Phylogenetic Tree(s): OG_06_0012545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g059980.3.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Solyc10g049370.2.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc10g049430.1.1 No alias Probable pectinesterase/pectinesterase inhibitor 46... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 25 113
No external refs found!