Solyc09g064440.4.1


Description : subfamily ABCC transporter


Gene families : OG0000058 (Archaeplastida) Phylogenetic Tree(s): OG0000058_tree ,
OG_05_0000437 (LandPlants) Phylogenetic Tree(s): OG_05_0000437_tree ,
OG_06_0010633 (SeedPlants) Phylogenetic Tree(s): OG_06_0010633_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g064440.4.1
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
AT1G30420 ATMRP12, MRP12, ABCC11 multidrug resistance-associated protein 12 0.02 Archaeplastida
GSVIVT01014631001 No alias ABC transporter C family member 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01014633001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
MA_101915g0010 No alias ABC transporter C family member 6 OS=Arabidopsis... 0.03 Archaeplastida
MA_10426119g0010 No alias ABC transporter C family member 2 OS=Arabidopsis... 0.02 Archaeplastida
MA_10434414g0010 No alias ABC transporter C family member 1 OS=Arabidopsis... 0.02 Archaeplastida
Smo145432 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Smo267218 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 660 793
IPR003439 ABC_transporter-like 1302 1450
IPR011527 ABC1_TM_dom 969 1211
IPR011527 ABC1_TM_dom 331 595
No external refs found!