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  5. Solyc09g082530.3.1

Solyc09g082530.3.1


Description : LRR-domain extensin


Gene families : OG0000279 (Archaeplastida) Phylogenetic Tree(s): OG0000279_tree ,
OG_05_0000206 (LandPlants) Phylogenetic Tree(s): OG_05_0000206_tree ,
OG_06_0000158 (SeedPlants) Phylogenetic Tree(s): OG_06_0000158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g082530.3.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271610 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.05 Archaeplastida
AMTR_s00056p00176290 evm_27.TU.AmTr_v1... Leucine-rich repeat extensin-like protein 3... 0.04 Archaeplastida
AMTR_s00160p00027170 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.06 Archaeplastida
AT1G49750 No alias Leucine-rich repeat (LRR) family protein 0.03 Archaeplastida
AT1G62440 LRX2 leucine-rich repeat/extensin 2 0.07 Archaeplastida
AT3G19320 No alias Leucine-rich repeat (LRR) family protein 0.04 Archaeplastida
AT3G22800 No alias Leucine-rich repeat (LRR) family protein 0.07 Archaeplastida
AT4G06744 No alias Leucine-rich repeat (LRR) family protein 0.06 Archaeplastida
AT4G18670 No alias Leucine-rich repeat (LRR) family protein 0.03 Archaeplastida
AT4G28380 No alias Leucine-rich repeat (LRR) family protein 0.06 Archaeplastida
GSVIVT01018025001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.04 Archaeplastida
GSVIVT01020574001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.06 Archaeplastida
GSVIVT01031702001 No alias Uncharacterized protein At4g06744 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01031843001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.04 Archaeplastida
GSVIVT01034267001 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.03 Archaeplastida
Gb_10910 No alias LRR-domain extensin 0.03 Archaeplastida
Gb_12380 No alias LRR-domain extensin 0.03 Archaeplastida
LOC_Os01g08470.1 No alias LRR-domain extensin 0.05 Archaeplastida
LOC_Os01g41120.1 No alias LRR-domain extensin 0.05 Archaeplastida
LOC_Os02g04540.1 No alias LRR-domain extensin 0.02 Archaeplastida
LOC_Os02g40260.1 No alias Uncharacterized protein At4g06744 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os03g43650.1 No alias LRR-domain extensin 0.05 Archaeplastida
LOC_Os03g58110.1 No alias LRR-domain extensin 0.12 Archaeplastida
LOC_Os04g42620.1 No alias Uncharacterized protein At4g06744 OS=Arabidopsis... 0.06 Archaeplastida
LOC_Os05g08770.2 No alias LRR-domain extensin 0.04 Archaeplastida
LOC_Os05g09640.1 No alias Leucine-rich repeat extensin-like protein 4... 0.03 Archaeplastida
LOC_Os06g49100.1 No alias LRR-domain extensin 0.04 Archaeplastida
LOC_Os07g07990.1 No alias LRR-domain extensin 0.05 Archaeplastida
Mp2g25390.1 No alias Leucine-rich repeat extensin-like protein 4... 0.02 Archaeplastida
Pp3c1_10970V3.1 No alias Leucine-rich repeat (LRR) family protein 0.03 Archaeplastida
Pp3c3_36180V3.1 No alias Leucine-rich repeat (LRR) family protein 0.04 Archaeplastida
Pp3c8_3600V3.1 No alias leucine-rich repeat/extensin 1 0.02 Archaeplastida
Smo81544 No alias Cell wall.cell wall proteins.hydroxyproline-rich... 0.02 Archaeplastida
Solyc01g107790.2.1 No alias Uncharacterized protein At4g06744 OS=Arabidopsis... 0.04 Archaeplastida
Solyc02g064940.1.1 No alias Uncharacterized protein At4g06744 OS=Arabidopsis... 0.04 Archaeplastida
Solyc04g078560.1.1 No alias Uncharacterized protein At4g06744 OS=Arabidopsis... 0.05 Archaeplastida
Solyc07g053840.1.1 No alias LRR-domain extensin 0.1 Archaeplastida
Zm00001e005974_P001 No alias LRR-domain extensin 0.07 Archaeplastida
Zm00001e011874_P001 No alias LRR-domain extensin 0.05 Archaeplastida
Zm00001e015109_P001 No alias Uncharacterized protein At4g06744 OS=Arabidopsis... 0.01 Archaeplastida
Zm00001e026840_P001 No alias LRR-domain extensin 0.02 Archaeplastida
Zm00001e031217_P001 No alias Leucine-rich repeat extensin-like protein 4... 0.04 Archaeplastida
Zm00001e031241_P001 No alias LRR-domain extensin 0.05 Archaeplastida
Zm00001e041184_P001 No alias Uncharacterized protein At4g06744 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e041899_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 41 73
No external refs found!