Solyc09g082710.3.1


Description : histone (H2A)


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g082710.3.1
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.08 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.03 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.08 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.04 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.09 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.1 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.04 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.09 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Gb_06384 No alias histone (H2A) 0.01 Archaeplastida
Gb_07070 No alias histone (H2A) 0.03 Archaeplastida
Gb_12570 No alias histone (H2A) 0.03 Archaeplastida
Gb_25326 No alias histone (H2A) 0.04 Archaeplastida
Gb_39944 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os01g31800.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os05g38640.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.07 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.06 Archaeplastida
MA_22203g0020 No alias histone (H2A) 0.02 Archaeplastida
MA_74667g0010 No alias histone (H2A) 0.02 Archaeplastida
MA_94328g0020 No alias histone (H2A) 0.03 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.06 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.04 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.03 Archaeplastida
Mp3g02370.1 No alias histone (H2A) 0.02 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.07 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.09 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 18 96
IPR032454 Histone_H2A_C 99 132
No external refs found!