Solyc09g083380.4.1


Description : linker histone (H1)


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g083380.4.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.05 Archaeplastida
AMTR_s00057p00112340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.04 Archaeplastida
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.12 Archaeplastida
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.04 Archaeplastida
Cpa|evm.model.tig00020780.71 No alias No description available 0.02 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.21 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.07 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.19 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.11 Archaeplastida
LOC_Os04g18090.1 No alias linker histone (H1) 0.24 Archaeplastida
LOC_Os07g08710.1 No alias linker histone (H1) 0.09 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.11 Archaeplastida
MA_10428525g0020 No alias linker histone (H1) 0.03 Archaeplastida
MA_10436125g0010 No alias linker histone (H1) 0.04 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.05 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.13 Archaeplastida
MA_5293931g0010 No alias No annotation 0.06 Archaeplastida
MA_6021364g0010 No alias linker histone (H1) 0.07 Archaeplastida
MA_6251451g0010 No alias No annotation 0.06 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.15 Archaeplastida
Pp3c18_19330V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.06 Archaeplastida
Zm00001e006018_P006 No alias linker histone (H1) 0.08 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.17 Archaeplastida
Zm00001e011857_P001 No alias linker histone (H1) 0.11 Archaeplastida
Zm00001e011859_P001 No alias linker histone (H1) 0.12 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Neighborhood
CC GO:0000818 nuclear MIS12/MIND complex IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031390 Ctf18 RFC-like complex IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 20 85
No external refs found!