Solyc09g083380.4.1

Description : linker histone (H1)

Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g083380.4.1
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264270	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.05	Archaeplastida
AMTR_s00057p00112340	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.04	Archaeplastida
AT1G06760	No alias	winged-helix DNA-binding transcription factor family protein	0.12	Archaeplastida
AT2G30620	No alias	winged-helix DNA-binding transcription factor family protein	0.04	Archaeplastida
Cpa\|evm.model.tig00020780.71	No alias	No description available	0.02	Archaeplastida
Cre13.g567450	No alias	Chromatin organisation.histones.H1 linker histone	0.21	Archaeplastida
GSVIVT01028074001	No alias	Chromatin organisation.histones.H1 linker histone	0.07	Archaeplastida
Gb_02738	No alias	linker histone (H1)	0.19	Archaeplastida
Gb_03348	No alias	linker histone (H1)	0.11	Archaeplastida
LOC_Os04g18090.1	No alias	linker histone (H1)	0.24	Archaeplastida
LOC_Os07g08710.1	No alias	linker histone (H1)	0.09	Archaeplastida
MA_102457g0010	No alias	linker histone (H1)	0.11	Archaeplastida
MA_10428525g0020	No alias	linker histone (H1)	0.03	Archaeplastida
MA_10436125g0010	No alias	linker histone (H1)	0.04	Archaeplastida
MA_10436125g0020	No alias	linker histone (H1)	0.05	Archaeplastida
MA_500183g0010	No alias	linker histone (H1)	0.13	Archaeplastida
MA_5293931g0010	No alias	No annotation	0.06	Archaeplastida
MA_6021364g0010	No alias	linker histone (H1)	0.07	Archaeplastida
MA_6251451g0010	No alias	No annotation	0.06	Archaeplastida
Mp6g03150.1	No alias	linker histone (H1)	0.15	Archaeplastida
Pp3c18_19330V3.1	No alias	winged-helix DNA-binding transcription factor family protein	0.06	Archaeplastida
Zm00001e006018_P006	No alias	linker histone (H1)	0.08	Archaeplastida
Zm00001e007189_P001	No alias	linker histone (H1)	0.17	Archaeplastida
Zm00001e011857_P001	No alias	linker histone (H1)	0.11	Archaeplastida
Zm00001e011859_P001	No alias	linker histone (H1)	0.12	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
CC	GO:0044217	other organism part	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000444	MIS12/MIND type complex	IEP	Neighborhood
CC	GO:0000818	nuclear MIS12/MIND complex	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007062	sister chromatid cohesion	IEP	Neighborhood
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
CC	GO:0031390	Ctf18 RFC-like complex	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:1903047	mitotic cell cycle process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	20	85

External Links

No external refs found!

Solyc09g083380.4.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation