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  5. Solyc09g089560.4.1

Solyc09g089560.4.1


Description : TRAF1 endomembrane trafficking ATG6-stability regulator protein


Gene families : OG0001944 (Archaeplastida) Phylogenetic Tree(s): OG0001944_tree ,
OG_05_0002285 (LandPlants) Phylogenetic Tree(s): OG_05_0002285_tree ,
OG_06_0002760 (SeedPlants) Phylogenetic Tree(s): OG_06_0002760_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g089560.4.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00232980 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.PI3-kinase... 0.03 Archaeplastida
AT1G04300 No alias TRAF-like superfamily protein 0.04 Archaeplastida
MA_10434493g0010 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 Archaeplastida
Pp3c12_910V3.1 No alias TRAF-like superfamily protein 0.02 Archaeplastida
Pp3c17_710V3.1 No alias TRAF-like superfamily protein 0.02 Archaeplastida
Zm00001e003140_P001 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.04 Archaeplastida
Zm00001e019653_P002 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 Archaeplastida
Zm00001e027387_P004 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.07 Archaeplastida
Zm00001e032087_P004 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
CC GO:0030677 ribonuclease P complex IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 75 192
No external refs found!