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  5. Solyc10g005080.3.1

Solyc10g005080.3.1


Description : transcription factor (MYB-related). circadian clock core oscillator protein (LHY|CCA1)


Gene families : OG0010951 (Archaeplastida) Phylogenetic Tree(s): OG0010951_tree ,
OG_05_0010146 (LandPlants) Phylogenetic Tree(s): OG_05_0010146_tree ,
OG_06_0010117 (SeedPlants) Phylogenetic Tree(s): OG_06_0010117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005080.3.1
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272270 evm_27.TU.AmTr_v1... Multi-process regulation.circadian clock.core oscillator... 0.09 Archaeplastida
AT1G01060 LHY1, LHY Homeodomain-like superfamily protein 0.12 Archaeplastida
AT2G46830 CCA1 circadian clock associated 1 0.12 Archaeplastida
LOC_Os08g06110.3 No alias transcription factor (MYB-related). circadian clock core... 0.06 Archaeplastida
Zm00001e021724_P005 No alias transcription factor (MYB-related). circadian clock core... 0.07 Archaeplastida
Zm00001e040216_P002 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e040217_P001 No alias circadian clock core oscillator protein (LHY|CCA1) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 24 67
No external refs found!