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  5. Solyc10g005090.3.1

Solyc10g005090.3.1


Description : Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana (sp|q9fnn9|pp370_arath : 861.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005090.3.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.02 Archaeplastida
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.05 Archaeplastida
LOC_Os01g66160.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
LOC_Os01g74600.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
LOC_Os02g58330.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_385322g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo118230 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
Smo99677 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Solyc02g069500.1.1 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.05 Archaeplastida
Zm00001e014549_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Zm00001e015517_P002 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e023289_P001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 184 224
IPR002885 Pentatricopeptide_repeat 264 290
IPR002885 Pentatricopeptide_repeat 632 661
IPR002885 Pentatricopeptide_repeat 292 319
IPR002885 Pentatricopeptide_repeat 532 557
IPR002885 Pentatricopeptide_repeat 500 529
IPR002885 Pentatricopeptide_repeat 670 694
IPR002885 Pentatricopeptide_repeat 395 424
IPR002885 Pentatricopeptide_repeat 366 386
No external refs found!