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  5. Solyc10g005125.1.1

Solyc10g005125.1.1


Description : Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana (sp|q9sp32|dcl1_arath : 1282.0)


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0004811 (LandPlants) Phylogenetic Tree(s): OG_05_0004811_tree ,
OG_06_0006379 (SeedPlants) Phylogenetic Tree(s): OG_06_0006379_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005125.1.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.02 Archaeplastida
GSVIVT01027460001 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica 0.05 Archaeplastida
MA_10429678g0010 No alias Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_311065g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_525318g0010 No alias Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp.... 0.04 Archaeplastida
Pp3c1_24950V3.1 No alias dicer-like 1 0.08 Archaeplastida
Zm00001e000158_P001 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0019902 phosphatase binding IEP Neighborhood
MF GO:0019903 protein phosphatase binding IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 656 773
IPR005034 Dicer_dimerisation_dom 848 936
IPR006935 Helicase/UvrB_N 260 420
No external refs found!