AMTR_s00030p00132070 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.79

Description : Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree ,
OG_06_0001149 (SeedPlants) Phylogenetic Tree(s): OG_06_0001149_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00132070
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT1G60650 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 Archaeplastida
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.01 Archaeplastida
AT5G04280 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.04 Archaeplastida
Cre17.g725301 No alias No description available 0.01 Archaeplastida
Cre17.g729150 No alias No description available 0.01 Archaeplastida
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
LOC_Os05g13620.1 No alias Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba... 0.02 Archaeplastida
LOC_Os05g13630.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os07g08960.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
LOC_Os10g17454.1 No alias RNA editing factor (ORRM) 0.04 Archaeplastida
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Mp4g15980.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Pp3c11_19620V3.1 No alias cold, circadian rhythm, and RNA binding 1 0.01 Archaeplastida
Pp3c12_1830V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 Archaeplastida
Pp3c12_23410V3.1 No alias glycine-rich RNA-binding protein 3 0.02 Archaeplastida
Pp3c17_4050V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 Archaeplastida
Pp3c7_3360V3.1 No alias cold, circadian rhythm, and RNA binding 1 0.01 Archaeplastida
Solyc01g104840.4.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Solyc03g071560.4.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Solyc09g092320.3.1 No alias RNA editing factor (ORRM) 0.02 Archaeplastida
Solyc10g081180.2.1 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.02 Archaeplastida
Solyc11g008210.3.1 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e005260_P002 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Zm00001e006287_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.01 Archaeplastida
Zm00001e033010_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 61 129
No external refs found!