Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.79
Description : Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana
Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree ,
OG_06_0001149 (SeedPlants) Phylogenetic Tree(s): OG_06_0001149_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00030p00132070 | |
Cluster | HCCA: Cluster_78 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G60650 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein with... | 0.02 | Archaeplastida | |
AT1G74230 | GR-RBP5 | glycine-rich RNA-binding protein 5 | 0.01 | Archaeplastida | |
AT5G04280 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein with... | 0.04 | Archaeplastida | |
Cre17.g725301 | No alias | No description available | 0.01 | Archaeplastida | |
Cre17.g729150 | No alias | No description available | 0.01 | Archaeplastida | |
Gb_40269 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.02 | Archaeplastida | |
LOC_Os05g13620.1 | No alias | Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba... | 0.02 | Archaeplastida | |
LOC_Os05g13630.1 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
LOC_Os07g08960.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.02 | Archaeplastida | |
LOC_Os10g17454.1 | No alias | RNA editing factor (ORRM) | 0.04 | Archaeplastida | |
MA_168323g0010 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.02 | Archaeplastida | |
Mp4g15980.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.02 | Archaeplastida | |
Pp3c11_19620V3.1 | No alias | cold, circadian rhythm, and RNA binding 1 | 0.01 | Archaeplastida | |
Pp3c12_1830V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein with... | 0.02 | Archaeplastida | |
Pp3c12_23410V3.1 | No alias | glycine-rich RNA-binding protein 3 | 0.02 | Archaeplastida | |
Pp3c17_4050V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein with... | 0.02 | Archaeplastida | |
Pp3c7_3360V3.1 | No alias | cold, circadian rhythm, and RNA binding 1 | 0.01 | Archaeplastida | |
Solyc01g104840.4.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Solyc03g071560.4.1 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Solyc09g092320.3.1 | No alias | RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
Solyc10g081180.2.1 | No alias | RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) | 0.02 | Archaeplastida | |
Solyc11g008210.3.1 | No alias | Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis... | 0.04 | Archaeplastida | |
Zm00001e005260_P002 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.03 | Archaeplastida | |
Zm00001e006287_P001 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.01 | Archaeplastida | |
Zm00001e033010_P001 | No alias | RNA chaperone (RZ1|GR-RBP) | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Neighborhood |
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0000179 | rRNA (adenine-N6,N6-)-dimethyltransferase activity | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0003924 | GTPase activity | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
CC | GO:0005730 | nucleolus | IEP | Neighborhood |
BP | GO:0006184 | obsolete GTP catabolic process | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016433 | rRNA (adenine) methyltransferase activity | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
BP | GO:0022607 | cellular component assembly | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
BP | GO:0051258 | protein polymerization | IEP | Neighborhood |
BP | GO:0065003 | protein-containing complex assembly | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 61 | 129 |
No external refs found! |