Solyc10g005260.3.1

Description : mRNA-binding regulatory factor (RBP45/47)

Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0000471 (LandPlants) Phylogenetic Tree(s): OG_05_0000471_tree ,
OG_06_0000318 (SeedPlants) Phylogenetic Tree(s): OG_06_0000318_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g005260.3.1
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00157p00079360	evm_27.TU.AmTr_v1...	Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana	0.05	Archaeplastida
AMTR_s00157p00080130	evm_27.TU.AmTr_v1...	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia	0.05	Archaeplastida
AT4G27000	ATRBP45C	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	Archaeplastida
GSVIVT01037634001	No alias	Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia	0.04	Archaeplastida
GSVIVT01037635001	No alias	Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_06023	No alias	mRNA-binding regulatory factor (RBP45/47)	0.04	Archaeplastida
Gb_26951	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	Archaeplastida
LOC_Os03g07800.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.02	Archaeplastida
LOC_Os04g37690.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.04	Archaeplastida
LOC_Os07g33330.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.05	Archaeplastida
LOC_Os08g09100.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	Archaeplastida
MA_10430323g0010	No alias	mRNA-binding regulatory factor (RBP45/47)	0.05	Archaeplastida
MA_10433660g0010	No alias	mRNA-binding regulatory factor (RBP45/47)	0.04	Archaeplastida
Pp3c12_10910V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	Archaeplastida
Pp3c12_10960V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	Archaeplastida
Zm00001e000547_P001	No alias	mRNA-binding regulatory factor (RBP45/47)	0.02	Archaeplastida
Zm00001e006878_P004	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e021626_P001	No alias	mRNA-binding regulatory factor (RBP45/47)	0.02	Archaeplastida
Zm00001e040981_P001	No alias	mRNA-binding regulatory factor (RBP45/47)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003713	transcription coactivator activity	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005956	protein kinase CK2 complex	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Neighborhood
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
BP	GO:0031124	mRNA 3'-end processing	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	276	340
IPR000504	RRM_dom	171	240
IPR000504	RRM_dom	78	143

External Links

No external refs found!

Solyc10g005260.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation