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  5. Solyc10g006070.3.1

Solyc10g006070.3.1


Description : component RPS8 of SSU proteome


Gene families : OG0001661 (Archaeplastida) Phylogenetic Tree(s): OG0001661_tree ,
OG_05_0001408 (LandPlants) Phylogenetic Tree(s): OG_05_0001408_tree ,
OG_06_0002231 (SeedPlants) Phylogenetic Tree(s): OG_06_0002231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g006070.3.1
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
AT5G20290 No alias Ribosomal protein S8e family protein 0.19 Archaeplastida
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
GSVIVT01006249001 No alias 40S ribosomal protein S8 OS=Zea mays 0.04 Archaeplastida
GSVIVT01031566001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
Gb_28325 No alias component RPS8 of SSU proteome 0.14 Archaeplastida
LOC_Os02g28810.1 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.11 Archaeplastida
LOC_Os04g28180.1 No alias component RPS8 of SSU proteome 0.12 Archaeplastida
MA_10436736g0010 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_14571g0010 No alias component RPS8 of SSU proteome 0.12 Archaeplastida
MA_4907g0010 No alias 40S ribosomal protein S8 OS=Prunus armeniaca... 0.05 Archaeplastida
MA_9738483g0010 No alias component RPS8 of SSU proteome 0.07 Archaeplastida
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.2 Archaeplastida
Pp3c12_18260V3.1 No alias Ribosomal protein S8e family protein 0.04 Archaeplastida
Pp3c13_20020V3.1 No alias Ribosomal protein S8e family protein 0.16 Archaeplastida
Pp3c19_6490V3.1 No alias Ribosomal protein S8e family protein 0.16 Archaeplastida
Pp3c22_1860V3.1 No alias Ribosomal protein S8e family protein 0.14 Archaeplastida
Pp3c4_11370V3.1 No alias Ribosomal protein S8e family protein 0.11 Archaeplastida
Zm00001e004092_P002 No alias component RPS8 of SSU proteome 0.14 Archaeplastida
Zm00001e024994_P001 No alias component RPS8 of SSU proteome 0.09 Archaeplastida
Zm00001e024995_P001 No alias component RPS8 of SSU proteome 0.13 Archaeplastida
Zm00001e024996_P001 No alias component RPS8 of SSU proteome 0.11 Archaeplastida
Zm00001e024999_P001 No alias component RPS8 of SSU proteome 0.05 Archaeplastida
Zm00001e025000_P003 No alias no hits & (original description: none) 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 1 196
No external refs found!