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  5. Solyc10g006390.3.1

Solyc10g006390.3.1


Description : pri-miRNA-DCL1 association factor (DAWDLE)


Gene families : OG0006269 (Archaeplastida) Phylogenetic Tree(s): OG0006269_tree ,
OG_05_0006344 (LandPlants) Phylogenetic Tree(s): OG_05_0006344_tree ,
OG_06_0007965 (SeedPlants) Phylogenetic Tree(s): OG_06_0007965_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g006390.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT3G20550 DDL SMAD/FHA domain-containing protein 0.03 Archaeplastida
Cpa|evm.model.tig00000361.22 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Cre09.g390430 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
LOC_Os05g46780.1 No alias pri-miRNA-DCL1 association factor (DAWDLE) 0.08 Archaeplastida
Mp7g08770.1 No alias pri-miRNA-DCL1 association factor (DAWDLE) 0.06 Archaeplastida
Pp3c19_14080V3.1 No alias SMAD/FHA domain-containing protein 0.02 Archaeplastida
Zm00001e031475_P002 No alias pri-miRNA-DCL1 association factor (DAWDLE) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000253 FHA_dom 425 505
No external refs found!