AMTR_s00030p00159240 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.99

Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana

Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00030p00159240
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00199950	evm_27.TU.AmTr_v1...	U-box domain-containing protein 31 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT2G35930	PUB23	plant U-box 23	0.02	Archaeplastida
AT3G02840	No alias	ARM repeat superfamily protein	0.03	Archaeplastida
AT3G11840	PUB24	plant U-box 24	0.06	Archaeplastida
AT3G52450	PUB22	plant U-box 22	0.05	Archaeplastida
AT5G37490	No alias	ARM repeat superfamily protein	0.04	Archaeplastida
GSVIVT01011139001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01011140001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01011616001	No alias	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01026542001	No alias	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_02628	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
Gb_16228	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_17119	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	Archaeplastida
Gb_19502	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.07	Archaeplastida
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_29851	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os01g64570.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
LOC_Os02g12410.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os02g33680.1	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g34410.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os02g50460.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os03g13740.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os04g34030.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.08	Archaeplastida
LOC_Os04g34140.1	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
LOC_Os04g49970.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
LOC_Os04g58920.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
LOC_Os06g13870.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os08g04470.1	No alias	U-box domain-containing protein 8 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os10g03440.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	Archaeplastida
MA_10432813g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	Archaeplastida
MA_10432981g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
MA_126399g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
MA_1663g0020	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
MA_17715g0010	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	Archaeplastida
MA_200041g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
MA_33190g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_3784951g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_415344g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
MA_52661g0010	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
MA_58844g0020	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
MA_61761g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	Archaeplastida
MA_84154g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
MA_8837995g0010	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.02	Archaeplastida
Mp2g06090.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Mp3g22750.1	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Pp3c10_20630V3.1	No alias	plant U-box 22	0.02	Archaeplastida
Pp3c4_6500V3.1	No alias	plant U-box 22	0.02	Archaeplastida
Smo104879	No alias	U-box domain-containing protein 25 OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc01g005160.4.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007000.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g007010.2.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g007020.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g007030.3.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
Solyc01g007040.4.1	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g007050.3.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.09	Archaeplastida
Solyc01g009320.2.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g080920.3.1	No alias	No annotation	0.07	Archaeplastida
Solyc02g079740.1.1	No alias	U-box domain-containing protein 8 OS=Arabidopsis...	0.01	Archaeplastida
Solyc04g008100.3.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.06	Archaeplastida
Solyc04g071030.1.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Solyc06g074140.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.06	Archaeplastida
Solyc11g005700.1.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Solyc11g006030.1.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.06	Archaeplastida
Solyc11g068920.1.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
Solyc11g068940.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.08	Archaeplastida
Zm00001e000999_P001	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e006484_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
Zm00001e007108_P001	No alias	No annotation	0.05	Archaeplastida
Zm00001e007109_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
Zm00001e008167_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e014752_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
Zm00001e014766_P001	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Zm00001e015763_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.06	Archaeplastida
Zm00001e019173_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e022698_P001	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e036030_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e039417_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e040854_P001	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e041397_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0015696	ammonium transport	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Neighborhood
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016830	carbon-carbon lyase activity	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0030170	pyridoxal phosphate binding	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0070279	vitamin B6 binding	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	6	78

External Links

No external refs found!

AMTR_s00030p00159240 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation