Solyc10g017880.2.1


Description : F-box protein At4g00755 OS=Arabidopsis thaliana (sp|q8lg03|fb345_arath : 264.0)


Gene families : OG0002449 (Archaeplastida) Phylogenetic Tree(s): OG0002449_tree ,
OG_05_0002588 (LandPlants) Phylogenetic Tree(s): OG_05_0002588_tree ,
OG_06_0002480 (SeedPlants) Phylogenetic Tree(s): OG_06_0002480_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g017880.2.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
MA_10434735g0010 No alias F-box protein At4g00755 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c17_15230V3.1 No alias F-box family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0043085 positive regulation of catalytic activity IEP Neighborhood
BP GO:0044093 positive regulation of molecular function IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!