1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g018500.1.1

Solyc10g018500.1.1


Description : Putative expansin-B2 OS=Arabidopsis thaliana (sp|q9shy6|expb2_arath : 219.0)


Gene families : OG0000383 (Archaeplastida) Phylogenetic Tree(s): OG0000383_tree ,
OG_05_0000369 (LandPlants) Phylogenetic Tree(s): OG_05_0000369_tree ,
OG_06_0088500 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g018500.1.1
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00059150 evm_27.TU.AmTr_v1... Putative expansin-B2 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT2G20750 EXPB1, ATEXPB1,... expansin B1 0.03 Archaeplastida
GSVIVT01018163001 No alias Putative expansin-B2 OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os02g44108.1 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os03g01260.1 No alias Expansin-B8 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os03g01270.1 No alias Expansin-B7 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os03g01610.1 No alias Expansin-B1 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os03g01650.1 No alias Expansin-B1 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os04g46630.1 No alias Expansin-B15 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os05g15690.1 No alias Expansin-B18 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os10g40700.1 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os10g40730.1 No alias Expansin-B4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_166764g0010 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_21214g0010 No alias beta-class expansin 0.02 Archaeplastida
MA_78155g0010 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Pp3c17_12970V3.1 No alias expansin B3 0.02 Archaeplastida
Pp3c17_12980V3.1 No alias expansin B3 0.01 Archaeplastida
Pp3c22_17770V3.1 No alias expansin B3 0.02 Archaeplastida
Smo171427 No alias Expansin-B17 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Zm00001e000036_P001 No alias Expansin-B4 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e036860_P001 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e037885_P001 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
MF GO:0016151 nickel cation binding IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 167 250
IPR009009 RlpA-like_DPBB 72 154
No external refs found!