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  5. Solyc10g018780.3.1

Solyc10g018780.3.1


Description : transcription factor (SBP)


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g018780.3.1
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00150040 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00019p00235390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00022p00198330 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AMTR_s00106p00142740 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00106p00144050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.06 Archaeplastida
AT1G27360 SPL11 squamosa promoter-like 11 0.03 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.05 Archaeplastida
AT1G69170 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.04 Archaeplastida
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.05 Archaeplastida
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.05 Archaeplastida
GSVIVT01003836001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01008556001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01010496001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01018204001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.09 Archaeplastida
Gb_26600 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_27198 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_38013 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g04680.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os09g32944.1 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_10429891g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_16835g0010 No alias Squamosa promoter-binding-like protein 1 OS=Arabidopsis... 0.04 Archaeplastida
MA_22749g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_92489g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
Mp1g10030.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c5_22750V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e003546_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e010067_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e010443_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e035060_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004506 squalene monooxygenase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 77 150
No external refs found!