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  5. Solyc10g044450.3.1

Solyc10g044450.3.1


Description : component UPF3 of RNA quality control Exon Junction complex


Gene families : OG0002934 (Archaeplastida) Phylogenetic Tree(s): OG0002934_tree ,
OG_05_0002802 (LandPlants) Phylogenetic Tree(s): OG_05_0002802_tree ,
OG_06_0003003 (SeedPlants) Phylogenetic Tree(s): OG_06_0003003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g044450.3.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein 0.03 Archaeplastida
Cre12.g488100 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
GSVIVT01023232001 No alias RNA processing.RNA quality control Exon Junction complex... 0.05 Archaeplastida
LOC_Os04g35920.2 No alias component UPF3 of RNA quality control Exon Junction complex 0.06 Archaeplastida
MA_102917g0010 No alias component UPF3 of RNA quality control Exon Junction complex 0.03 Archaeplastida
MA_69941g0010 No alias component UPF3 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Pp3c12_4230V3.1 No alias Smg-4/UPF3 family protein 0.03 Archaeplastida
Pp3c4_15540V3.1 No alias Smg-4/UPF3 family protein 0.03 Archaeplastida
Zm00001e008047_P001 No alias component UPF3 of RNA quality control Exon Junction complex 0.05 Archaeplastida
Zm00001e040916_P004 No alias component UPF3 of RNA quality control Exon Junction complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005120 UPF3_dom 4 166
No external refs found!