Solyc10g047130.2.1


Description : RNA chaperone (RZ1|GR-RBP)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree ,
OG_06_0001149 (SeedPlants) Phylogenetic Tree(s): OG_06_0001149_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g047130.2.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251200 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00013p00256900 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00030p00198740 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT5G04280 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Archaeplastida
Cre17.g725301 No alias No description available 0.03 Archaeplastida
Cre17.g729150 No alias No description available 0.01 Archaeplastida
GSVIVT01001672001 No alias Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_39691 No alias RNA editing factor (ORRM) 0.04 Archaeplastida
LOC_Os07g08960.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
LOC_Os07g36490.1 No alias RNA editing factor (ORRM) 0.02 Archaeplastida
MA_10428777g0010 No alias Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba... 0.03 Archaeplastida
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.06 Archaeplastida
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.01 Archaeplastida
Mp6g08160.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Smo81392 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Solyc10g081180.2.1 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 Archaeplastida
Zm00001e005260_P002 No alias RNA chaperone (RZ1|GR-RBP) 0.07 Archaeplastida
Zm00001e006287_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Zm00001e033010_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 10 78
IPR001878 Znf_CCHC 126 142
No external refs found!