AMTR_s00030p00235460 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.197

Description : RNA biosynthesis.transcriptional activation.OFP transcription factor


Gene families : OG0000130 (Archaeplastida) Phylogenetic Tree(s): OG0000130_tree ,
OG_05_0000050 (LandPlants) Phylogenetic Tree(s): OG_05_0000050_tree ,
OG_06_0000302 (SeedPlants) Phylogenetic Tree(s): OG_06_0000302_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00235460
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00238760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.OFP... 0.03 Archaeplastida
AMTR_s00103p00131630 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.OFP... 0.03 Archaeplastida
AT2G36026 No alias Ovate family protein 0.03 Archaeplastida
GSVIVT01009691001 No alias RNA biosynthesis.transcriptional activation.OFP... 0.04 Archaeplastida
GSVIVT01024579001 No alias No description available 0.07 Archaeplastida
LOC_Os02g45620.1 No alias transcription factor (OFP) 0.03 Archaeplastida
LOC_Os03g06350.1 No alias transcription factor (OFP) 0.02 Archaeplastida
LOC_Os04g58820.1 No alias transcription factor (OFP) 0.02 Archaeplastida
LOC_Os05g36990.1 No alias transcription factor (OFP) 0.03 Archaeplastida
LOC_Os08g01190.1 No alias transcription factor (OFP) 0.04 Archaeplastida
LOC_Os12g06150.1 No alias transcription factor (OFP) 0.03 Archaeplastida
MA_10434319g0010 No alias transcription factor (OFP) 0.03 Archaeplastida
Solyc01g007800.3.1 No alias transcription factor (OFP) 0.05 Archaeplastida
Solyc02g072030.1.1 No alias transcription factor (OFP) 0.03 Archaeplastida
Solyc02g085500.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc04g080210.1.1 No alias transcription factor (OFP) 0.04 Archaeplastida
Solyc06g074020.2.1 No alias transcription factor (OFP) 0.05 Archaeplastida
Zm00001e000448_P001 No alias transcription factor (OFP) 0.03 Archaeplastida
Zm00001e008181_P001 No alias transcription factor (OFP) 0.05 Archaeplastida
Zm00001e016408_P001 No alias transcription factor (OFP) 0.04 Archaeplastida
Zm00001e024171_P001 No alias transcription factor (OFP) 0.05 Archaeplastida
Zm00001e031752_P001 No alias transcription factor (OFP) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006458 Ovate_C 157 215
No external refs found!