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  5. Solyc10g050950.1.1

Solyc10g050950.1.1


Description : transcription factor (MADS/AGL)


Gene families : OG0007582 (Archaeplastida) Phylogenetic Tree(s): OG0007582_tree ,
OG_05_0005641 (LandPlants) Phylogenetic Tree(s): OG_05_0005641_tree ,
OG_06_0003653 (SeedPlants) Phylogenetic Tree(s): OG_06_0003653_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g050950.1.1
Cluster HCCA: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
Solyc03g033570.1.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc03g033900.1.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009611 response to wounding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 16 63
No external refs found!