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  5. AMTR_s00030p00239430

AMTR_s00030p00239430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.208

Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006977 (Archaeplastida) Phylogenetic Tree(s): OG0006977_tree ,
OG_05_0005354 (LandPlants) Phylogenetic Tree(s): OG_05_0005354_tree ,
OG_06_0009081 (SeedPlants) Phylogenetic Tree(s): OG_06_0009081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00239430
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01034651001 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 Archaeplastida
Pp3c16_280V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
Solyc11g006680.3.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 Archaeplastida
Zm00001e041970_P002 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 723 771
IPR002885 Pentatricopeptide_repeat 547 596
IPR002885 Pentatricopeptide_repeat 477 525
IPR002885 Pentatricopeptide_repeat 617 665
IPR002885 Pentatricopeptide_repeat 446 475
IPR002885 Pentatricopeptide_repeat 411 440
IPR002885 Pentatricopeptide_repeat 376 401
IPR002885 Pentatricopeptide_repeat 341 370
IPR000504 RRM_dom 162 234
IPR002885 Pentatricopeptide_repeat 310 337
IPR002885 Pentatricopeptide_repeat 789 821
IPR002885 Pentatricopeptide_repeat 684 716
No external refs found!