Solyc10g055580.2.1

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes

Gene families : OG0000418 (Archaeplastida) Phylogenetic Tree(s): OG0000418_tree ,
OG_05_0000338 (LandPlants) Phylogenetic Tree(s): OG_05_0000338_tree ,
OG_06_0000762 (SeedPlants) Phylogenetic Tree(s): OG_06_0000762_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g055580.2.1
Cluster	HCCA: Cluster_163

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os07g05150.1	No alias	target protein binding component SKP1/ASK1 of...	0.02	Archaeplastida
LOC_Os07g05180.1	No alias	target protein binding component SKP1/ASK1 of...	0.02	Archaeplastida
LOC_Os08g28820.1	No alias	target protein binding component SKP1/ASK1 of...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006825	copper ion transport	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
BP	GO:0035434	copper ion transmembrane transport	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR016072	Skp1_comp_dimer	101	148
IPR016073	Skp1_comp_POZ	1	59

External Links

No external refs found!